Give us a machine Serial Number so that the correct engine info can be supplied. As Ben pointed out there are a lot of different engine options that a S/N would narrow to just one.
Confirming what Ben said, there is no Diagnostic Code that would stop this engine from starting, so it appears that the problem for which you tore the engine down is not completely fixed yet.
If it is a HEUI engine then here's how the system works to light the fires from cold. The ECM monitors the hydraulic pressure at the Injection Actuation Pressure (IAP) sensor. The ECM calculates a "Desired Actuation Pressure" and compares it to the IAP pressure reading. Once the IAP reaches or exceeds the Desired pressure the electronics activate the injectors and you get smoke out of the chimney.
If you are getting no smoke at all then the causes could be slow cranking speed (you need 150RPM as an absolute minimum), oil leaks within the High Pressure side of the system that prevent the pump generating sufficient pressure (possible as you have had the whole system apart by the sound of it), leaking injector poppet valves (try cranking the engine with the valve cover off and look for oil spilling out of the injector exhaust port hole), or a bad HEUI pump (v. expensive). Or, even more expensive, a combination of all the foregoing ........