Sounds like an electric or hydraulic issue, I think there was some kind of optional clutch disconnect built into that transmission, but I am not sure what it amounts to or what controls it, could be a small inching pedal, or a switch on the parking brake control. If that machine has it, that may be the issue. Other than that I'm at a loss, I would think if it were sucking air or something it would be less on/off in nature?